Publication List

1. Fukuda K*, Shinkai Y*. SETDB1-Mediated Silencing of Retroelements. Viruses. 2020, 12:596. [PubMed]
2. Tsusaka T, Fukuda K, Shimura C, Kato M*. Shinkai Y*. The fibronectin type-III (FNIII) domain of ATF7IP contributes to efficient transcriptional silencing mediated by the SETDB1 complex. Epigenetics and chromatin. (2020) 13:52 [PubMed]
3. Ohishi H, Yeung W, Unoki M, Ichiyangi K, Fukuda K, Maenohara S, Shirane K, Chiba H, Sada T, Sasaki H. Characterization of genetic-origin-dependent monoallelic expression in mouse embryonic stem cells. Genes Cells 2020 Jan;25(1):54-64. doi: 10.1111/gtc.12736. Epub 2019 Dec 11. [PubMed]
4. Fukuda K, Okuda A, Yusa K, Shinkai Y*. A CRISPR knockout screen Identifies SETDB1-target retroelement silencing factors in embryonic stem cells. Genome Res. 2018 May 4. pii: gr.227280.117. [PubMed]
5. Shimosuga KI, Fukuda K, Sasaki H, Ichiyanagi K. Locus-specific hypomethylation of the mouse IAP retrotransposon is associated with transcription factor-binding sites.Mob DNA 2017 Dec 13;8:20. doi: 10.1186/s13100-017-0105-0. [PubMed]
6. Matsuda S, Yasukawa T, Sakaguchi Y, Ichiyanagi K, Unoki M, Gotoh K, Fukuda K, Sasaki H, Suzuki T, Kang D. Accurate estimation of 5-methylcytosine in mammalian mitochondrial DNA. Sci Rep. 2018 Apr 11;8(1):5801. doi: 10.1038/s41598-018-24251-z. [PubMed]
7. Inoue K, Ichiyanagi K, Fukuda K, Glinka M, Sasaki H. 2017. Switching of dominant retrotransposon silencing strategies from posttranscriptional to transcriptional mechanisms during male germ-cell development in mice. PLoS Genet. Jul 27;13(7):e1006926. [PubMed]
8. Fukuda K, Inoguchi Y, Ichiyanagi K, Ichiyanagi T, Go Y, Nagano M, Yanagawa Y, Takaesu N, Ohkawa Y, Imai H, Sasaki H. Hum Mol Genet. 2017. Evolution of the sperm methylome of primates is associated with retrotransposon insertions and genome instability. Hum. Mol. Genet. Jun 20. doi: 10.1093/hmg/ddx236. [PubMed]
9. Fukuda K, Ichiyanagi K, Yamada Y, Go Y, Udono T, Wada S, Maeda T, Soejima H, Saitou N, Ito T et al. 2013. Regional DNA methylation differences between humans and chimpanzees are associated with genetic changes, transcriptional divergence and disease genes. J Hum Genet 58(7): 446-454.[PubMed]
10. Fukuda K, Kutsuzawa K, Maruyama K, Akiyama Y, Chowdhury EH. 2012. Synergistic effect of PKC activation and actin filament disruption on carbonate apatite-facilitated lymphocyte transfection. Biochem Biophys Res Commun 419(3): 482-484.[PubMed]
11. Ichiyanagi K, Li Y, Watanabe T, Ichiyanagi T, Fukuda K, Kitayama J, Yamamoto Y, Kuramochi-Miyagawa S, Nakano T, Yabuta Y et al. 2011. Locus- and domain-dependent control of DNA methylation at mouse B1 retrotransposons during male germ cell development. Genome Res 21(12): 2058-2066.[PubMed]
12. Kutsuzawa K, Tada S, Hossain S, Fukuda K, Maruyama K, Akiyama Y, Akaike T, Chowdhury EH. 2009. Disrupting actin filaments promotes efficient transfection of a leukemia cell line using cell adhesive protein-embedded carbonate apatite particles. Anal Biochem 388(1): 164-166.[PubMed]
13. Yokomizo H, Inoguchi T, Sonoda N, Sakaki Y, Maeda Y, Inoue T, Hirata E, Takei R, Ikeda N, Fujii M, Fukuda K et al. 2014. Maternal high fat diet induces insulin resistance and deterioration of pancreatic beta cell function in adult offspring with gender differences in mice. Am J Physiol Endocrinol Metab 306(10):E1163-75.[PubMed]